List pipeline output files for each sample. — list_pipeline_files • clover

Given a parsed pipeline configuration, construct expected file paths for each sample and result type.

Usage

list_pipeline_files(
  config,
  types = c("charging", "bcerror", "odds_ratios", "align_stats")
)

Arguments

config: A list returned by read_pipeline_config().
types: Character vector of result types. Valid values: "charging", "bcerror", "odds_ratios", "align_stats".

Value

A tibble with columns sample_id, type, and path.

Examples

if (FALSE) { # \dontrun{
config <- read_pipeline_config("path/to/config.yaml")
list_pipeline_files(config, types = c("charging", "bcerror"))
} # }